Michael Gribskov: search on Z-Library

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1

Arabidopsis Functional Genomics || The Complement of Protein Phosphatase Catalytic Subunits Encoded in the Genome of Arabidopsis

David Kerk, Joshua Bulgrien, Douglas W. Smith, Brooke Barsam, Stella Veretnik and Michael Gribskov

Journal:

PLANT PHYSIOLOGY

Year:

2002

Language:

english

File:

PDF, 2.52 MB

english, 2002

2

Three Genes Define a Bacterial-Like Arsenic Tolerance Mechanism in the Arsenic Hyperaccumulating Fern Pteris vittata

Cai, Chao, Lanman, Nadia A., Withers, Kelley A., DeLeon, Alyssa M., Wu, Qiong, Gribskov, Michael, Salt, David E., Banks, Jo Ann

Journal:

Current Biology

Year:

2019

File:

PDF, 2.24 MB

2019

3

CDPKs – a kinase for every Ca2+ signal?

Alice C. Harmon, Michael Gribskov, Jeffrey F. Harper

Journal:

Trends in Plant Science

Year:

2000

Language:

english

File:

PDF, 88 KB

english, 2000

4

The codon preference plot: graphic analysis of protein coding sequences and prediction of gene expression

Gribskov, Michael, Devereux, John, Burgess, Richard R.

Journal:

Nucleic Acids Research

Year:

1984

Language:

english

File:

PDF, 407 KB

english, 1984

5

Profile Analysis: Detection of Distantly Related Proteins

Michael Gribskov, Andrew D. McLachlan and David Eisenberg

Journal:

Proceedings of the National Academy of Sciences

Year:

1987

Language:

english

File:

PDF, 682 KB

english, 1987

6

Use of controlled terminology hierarchies to detect common characteristics of genes within expression clusters

Masys, Daniel, Welsh, John B., Fink, J. Lynn, Gribskov, Michael, Klacansky, Igor, Corbeil, Jacques

Journal:

Nature Genetics

Year:

2001

Language:

english

File:

PDF, 31 KB

english, 2001

7

Arabidopsis Proteins Containing Similarity to the Universal Stress Protein Domain of Bacteria

David Kerk, Joshua Bulgrien, Douglas W. Smith and Michael Gribskov

Journal:

PLANT PHYSIOLOGY

Year:

2003

Language:

english

File:

PDF, 2.11 MB

english, 2003

8

Analysis of the structure of chemically synthesized HIV-1 protease complexed with a hexapeptide inhibitor. Part I: Crystallographic refinement of 2 Å data

Maria Miller, Maciej Geller, Michael Gribskov, Stephen B. H. Kent

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

1997

Language:

english

File:

PDF, 294 KB

english, 1997

9

Use of receiver operating characteristic (ROC) analysis to evaluate sequence matching

Michael Gribskov, Nina L. Robinson

Journal:

Computers & Chemistry

Year:

1996

Language:

english

File:

PDF, 676 KB

english, 1996

10

DEIsoM: A hierarchical Bayesian model for identifying differentially expressed isoforms using biological replicates

Peng, Hao, Yang, Yifan, Zhe, Shandian, Wang, Jian, Gribskov, Michael, Qi, Yuan(Alan)

Journal:

Year:

2017

Language:

english

File:

PDF, 627 KB

english, 2017

11

Protein kinase resource: An integrated environment for phosphorylation research

Roland H. Niedner, Oleksandr V. Buzko, Nina M. Haste, Ashton Taylor, Michael Gribskov, Susan S. Taylor

Journal:

Proteins: Structure, Function, and Bioinformatics

Year:

2006

Language:

english

File:

PDF, 717 KB

english, 2006

12

Signalling in Plants || The CDPK Superfamily of Protein Kinases

Alice C. Harmon, Michael Gribskov, Erika Gubrium and Jeffrey F. Harper

Journal:

New Phytologist

Year:

2001

Language:

english

File:

PDF, 1.53 MB

english, 2001

13

Bioinformatics research in the Asia Pacific: a 2007 update

Shoba Ranganathan, Michael Gribskov, Tin Wee Tan

Journal:

BMC Bioinformatics

Year:

2008

Language:

english

File:

PDF, 180 KB

english, 2008

14

Estimating and Evaluating the Statistics of Gapped Local-Alignment Scores

Bailey, Timothy L., Gribskov, Michael

Journal:

Journal of Computational Biology

Year:

2002

Language:

english

File:

PDF, 373 KB

english, 2002

15

AptRank: an adaptive PageRank model for protein function prediction on bi-relational graphs

Jiang, Biaobin, Kloster, Kyle, Gleich, David F., Gribskov, Michael

Journal:

Year:

2017

Language:

english

File:

PDF, 616 KB

english, 2017

16

Rival penalized competitive learning (RPCL): a topology-determining algorithm for analyzing gene expression data

T.Murlidharan Nair, Christina L. Zheng, J.Lynn Fink, Robert O. Stuart, Michael Gribskov

Journal:

Computational Biology and Chemistry

Year:

2003

Language:

english

File:

PDF, 410 KB

english, 2003

17

modulewriter: a program for automatic generation of database interfaces

Christina L Zheng, Fariba Fana, Poornaprajna V Udupi, Michael Gribskov

Journal:

Computational Biology and Chemistry

Year:

2003

Language:

english

File:

PDF, 288 KB

english, 2003

18

Profile scanning for three-dimensional structural patterns in protein sequences

Gribskov, Michael, Homyak, Michelle, Edenfield, Jeffrey, Eisenberg, David

Journal:

Year:

1988

Language:

english

File:

PDF, 466 KB

english, 1988

19

The ISCB: Growing and Evolving in Step with Science

Gribskov, Michael

Journal:

PLoS Computational Biology

Year:

2005

Language:

english

File:

PDF, 222 KB

english, 2005

20

[IEEE 2015 IEEE International Conference on Big Data (Big Data) - Santa Clara, CA, USA (2015.10.29-2015.11.1)] 2015 IEEE International Conference on Big Data (Big Data) - MMC-margin: Identification of maximum frequent subgraphs by metropolis Monte Carlo sampling

Liu, Muyi, Gribskov, Michael

Year:

2015

Language:

english

File:

PDF, 875 KB

english, 2015

21

Differential gene expression in Varroa jacobsoni mites following a host shift to European honey bees (Apis mellifera)

Andino, Gladys K., Gribskov, Michael, Anderson, Denis L., Evans, Jay D., Hunt, Greg J.

Journal:

Year:

2016

Language:

english

File:

PDF, 905 KB

english, 2016

22

The evolution history of Fe-S cluster A-type assembly protein reveals multiple gene duplication events and essential protein motifs

Lu, Hui-Meng, Li, Jing-Di, Zhang, Yu-Dan, Lu, Xiao-Li, Xu, Chang, Huang, Yuan, Gribskov, Michael, Embley, Martin

Journal:

Genome Biology and Evolution

Year:

2020

Language:

english

File:

PDF, 2.35 MB

english, 2020

23

AUDIT: approving and tracking updates with dependencies in collaborative databases

Mershad, Khaleel, Malluhi, Qutaibah M., Ouzzani, Mourad, Tang, Mingjie, Gribskov, Michael, Aref , Walid G.

Journal:

Distributed and Parallel Databases

Year:

2017

Language:

english

File:

PDF, 4.00 MB

english, 2017

24

Three Genes Define a Bacterial-Like Arsenic Tolerance Mechanism in the Arsenic Hyperaccumulating Fern Pteris vittata

Cai, Chao, Lanman, Nadia A., Withers, Kelley A., DeLeon, Alyssa M., Wu, Qiong, Gribskov, Michael, Salt, David E., Banks, Jo Ann

Journal:

Current Biology

Year:

2019

Language:

english

File:

PDF, 2.24 MB

english, 2019

25

The CDPK superfamily of protein kinases

Alice C. Harmon, Michael Gribskov, Erika Gubrium, Jeffrey F. Harper

Journal:

New Phytologist

Year:

2001

Language:

english

File:

PDF, 60.49 MB

english, 2001

26

A left-handed crossover involved in amidohydrolase catalysis: Crystal structure of Erwinia chrysanthemi l-asparaginase with bound l-aspartate

Maria Miller, J.K.Mohana Rao, Alexander Wlodawer, Michael R. Gribskov

Journal:

Year:

1993

Language:

english

File:

PDF, 582 KB

english, 1993

27

COACT: a query interface language for collaborative databases

Mershad, Khaleel, Malluhi, Qutaibah M., Ouzzani, Mourad, Tang, Mingjie, Gribskov, Michael, Aref, Walid G., Prakash, Deo

Journal:

Distributed and Parallel Databases

Year:

2017

Language:

english

File:

PDF, 2.27 MB

english, 2017

28

Translational initiation factors IF-1 and eIF-2α share an RNA-binding motif with prokaryotic ribosomal protein S1 and polynucleotide phosphorylase

Gribskov, Michael

Journal:

Year:

1992

Language:

english

File:

PDF, 1.03 MB

english, 1992

29

[Methods in Enzymology] Computer Methods for Macromolecular Sequence Analysis Volume 266 || [13] Identification of sequence patterns with profile analysis

Gribskov, Michael

Year:

1996

Language:

english

File:

PDF, 835 KB

english, 1996

30

Accurate Classification of RNA Structures Using Topological Fingerprints

Huang, Jiajie, Li, Kejie, Gribskov, Michael, Barash, Danny

Journal:

Year:

2016

Language:

english

File:

PDF, 2.91 MB

english, 2016

31

Calcium-Dependent Protein Kinases from Arabidopsis Show Substrate Specificity Differences in an Analysis of 103 Substrates

Curran, Amy, Chang, Ing-Feng, Chang, Chia-Lun, Garg, Shilpi, Miguel, Rodriguez Milla, Barron, Yoshimi D., Li, Ying, Romanowsky, Shawn, Cushman, John C., Gribskov, Michael, Harmon, Alice C., Harper, Je

Journal:

Frontiers in Plant Science

Year:

2011

Language:

english

File:

PDF, 1.73 MB

english, 2011

32

Comparative genome analysis reveals niche-specific genome expansion in Acinetobacter baumannii strains

Yakkala, Harshita, Samantarrai, Devyani, Gribskov, Michael, Siddavattam, Dayananda, Gao, Feng

Journal:

Year:

2019

Language:

english

File:

PDF, 4.72 MB

english, 2019

33

The language metaphor in sequence analysis

Michael Gribskov

Journal:

Computers & Chemistry

Year:

1992

Language:

english

File:

PDF, 421 KB

english, 1992

34

Reference Module in Life Sciences || Identification of Sequence Patterns, Motifs and Domains

Gribskov, Michael

Year:

2018

Language:

english

File:

PDF, 626 KB

english, 2018

35

Establishing bioinformatics research in the Asia Pacific

Shoba Ranganathan, Martti Tammi, Michael Gribskov, Tin Wee Tan

Journal:

BMC Bioinformatics

Year:

2006

Language:

english

File:

PDF, 206 KB

english, 2006

36

CellMiner Companion: an interactive web application to explore CellMiner NCI-60 data

Wang, Sufang, Gribskov, Michael, Hazbun, Tony R., Pascuzzi, Pete E.

Journal:

Year:

2016

Language:

english

File:

PDF, 284 KB

english, 2016

37

[IEEE 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Washington, DC, USA (2015.11.9-2015.11.12)] 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM) - Differential gene expression in Varroa jacobsoni mites following a host shift to European honey bees (Apis mellifera)

Andino, Gladys K, Gribskov, Michael, Hunt, Greg J., Anderson, Denis, Evans, Jay D.

Year:

2015

Language:

english

File:

PDF, 256 KB

english, 2015

38

An Open Forum for Computational Biology

Gribskov, Michael

Journal:

PLoS Computational Biology

Year:

2005

Language:

english

File:

PDF, 159 KB

english, 2005

39

Chromatin-enriched RNAs mark active and repressive cis-regulation: An analysis of nuclear RNA-seq

Sun, Xiangying, Wang, Zhezhen, Hall, Johnathon M., Perez-Cervantes, Carlos, Ruthenburg, Alexander J., Moskowitz, Ivan P., Gribskov, Michael, Yang, Xinan H., Ay, Ferhat

Journal:

PLoS Computational Biology

Year:

2020

File:

PDF, 3.88 MB

2020

40

Shiny-DEG: A Web Application to Analyze and Visualize Differentially Expressed Genes in RNA-seq

Wang, Sufang, Zhang, Yu, Hu, Congzhan, Zhang, Nu, Gribskov, Michael, Yang, Hui

Journal:

Interdisciplinary Sciences: Computational Life Sciences

Year:

2020

File:

PDF, 2.04 MB

2020

41

An integrated Arabidopsis annotation database for Affymetrix Genechip® data analysis, and tools for regulatory motif searches

Majid Ghassemian, David Waner, Jason Tchieu, Michael Gribskov, Julian I Schroeder

Journal:

Trends in Plant Science

Year:

2001

Language:

english

File:

PDF, 99 KB

english, 2001

42

Metabolite Profiles in Starved Diporeia spp. Using Liquid Chromatography-Mass Spectrometry (LC-MS) Based Metabolomics

Adamec, Jiri, Jannasch, Amber, Höök, Tomas O., Nalepa, Thomas, Gribskov, Michael, Sepúlveda, Maria S., Maity, Suman

Journal:

Journal of Crustacean Biology

Year:

2012

Language:

english

File:

PDF, 1.45 MB

english, 2012

43

Comprehensive evaluation of de novo transcriptome assembly programs and their effects on differential gene expression analysis

Wang, Sufang, Gribskov, Michael

Journal:

Year:

2016

Language:

english

File:

PDF, 1.27 MB

english, 2016

44

miRNAâmediated macrophage behaviors responding to matrix stiffness and oxâLDL

Li, Jing, Wang, Sufang, Li, Yuhui, Zhang, Nu, Gribskov, Michael, Zhang, Xi, Lin, Min, Shao, Dongyan, Zhang, Chen, Dai, Liangliang, Qin, Chuanguang, Duan, Xianglong, Li, Juntang, Xu, Feng, Yang, Hui

Journal:

Journal of Cellular Physiology

Year:

2020

Language:

english

File:

PDF, 5.55 MB

english, 2020

45

Protein–protein interactions of tandem affinity purification-tagged protein kinases in rice

Jai S. Rohila, Mei Chen, Shuo Chen, Johann Chen, Ronald Cerny, Chris Dardick, Patrick Canlas, Xia Xu, Michael Gribskov, Siddhartha Kanrar, Jian-Kang Zhu, Pamela Ronald, Michael E. Fromm

Journal:

The Plant Journal

Year:

2006

Language:

english

File:

PDF, 178 KB

english, 2006

46

Protein-Protein Interactions of Tandem Affinity Purified Protein Kinases from Rice

Rohila, Jai S., Chen, Mei, Chen, Shuo, Chen, Johann, Cerny, Ronald L., Dardick, Christopher, Canlas, Patrick, Fujii, Hiroaki, Gribskov, Michael, Kanrar, Siddhartha, Knoflicek, Lucas, Stevenson, Becky,

Journal:

Year:

2009

Language:

english

File:

PDF, 253 KB

english, 2009

47

Transcriptome analysis identifies metallothionein as biomarkers to predict recurrence in hepatocellular cacinoma

Wang, Sufang, Gribskov, Michael

Journal:

Molecular Genetics & Genomic Medicine

Year:

2019

Language:

english

File:

PDF, 973 KB

english, 2019

48

[Methods in Enzymology] Volume 183 || [9] Profile analysis

Gribskov, Michael

Year:

1990

Language:

english

File:

PDF, 800 KB

english, 1990

49

Ontogenetic changes in embryonic and brain gene expression in progeny produced from migratory and resident Oncorhynchus mykiss

McKinney, Garrett J., Hale, Matthew C., Goetz, Giles, Gribskov, Michael, Thrower, Frank P., Nichols, Krista M.

Journal:

Molecular Ecology

Year:

2015

Language:

english

File:

PDF, 321 KB

english, 2015

50

PEPPLOT, a protein secondary structure analysis program for the UWGCG sequence analysis software package

Gribskov, Michael, Burgess, Richard R., Devereux, John

Journal:

Nucleic Acids Research

Year:

1986

Language:

english

File:

PDF, 306 KB

english, 1986

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